CONTENTS
Preface
CHAPTER 1 The History in Our Genes
Anthropologists, Genetics, and History: About Us
Genetics and Human History
CHAPTER 2 The Naked Ape
Our Place in Nature
Who Is Our Closest Living Relative?
Genetic Comparisons of Apes and Humans
Dating the Split
Views on Classification
What Makes Us Different?
CHAPTER 3 Out of Africa: Our Genetic Legacy
A Quick Summary of Human Evolution
What Is a Species?
Models of Modern Human Origins
Fossil Evidence for an African Origin
Gene Trees
Most Gene Trees Have African Roots
Genetic Diversity Is Higher in Sub-Saharan African Populations
Genetic Drift, Mutation, and African Diversity
Genetic Diversity Decreases with Distance Out of Africa
Genetic Distance
Global Genetic Distances Correlate with Geographic Distance
What Happened Next?
CHAPTER 4 The Fate of the Neandertals (and Other Archaic Humans)
A Brief History of the Discovery and Interpretation of Neandertals
The Discovery of Neandertal DNA
More Neandertal Mitochondrial DNA
Where Did All the Neandertal Mitochondrial Sequences Go?
The Neandertal Genome Sequence
The Denisovans
What Did We Inherit from Archaic Humans?
The Future of Studies of Neandertals (and Other Archaic Humans)
CHAPTER 5 The First Inhabitants of the Americas
Where Did the First Migrants Come From, and How and When Did They Arrive?
The Genetic Link between Asia and North America
Studies of Mitochondrial DNA
Nuclear DNA Studies
Insights from Ancient Genomes
How Many Migrations?
Past and Present
CHAPTER 6 Genetics and the Spread of Agriculture in Europe
Origins of Agriculture
The Emergence of Agriculture in Europe
Cultural Diffusion versus Demic Diffusion
Genetic Evidence for Demic Diffusion
Insights from Ancient DNA
Other Migrations into Europe
Genetic Adaptation and the Spread of Agriculture: The Case of Lactase Persistence
The Genetic and Cultural History of Europe
CHAPTER 7 Voyagers of the Pacific
Where Did the Polynesians Come From?
Genetic Distances and Polynesia
What Does Mitochondrial DNA Tell Us?
The Evidence from Y Chromosomes
The Evidence from Autosomal DNA
Sex Differences in Polynesian Ancestry
A Final Thought about Expansions
CHAPTER 8 Three Tales from Ireland
English Gene Flow in the Aran Islands
Invasions, Settlements, and Irish History
The Origin of the Irish Travellers
Some Closing Thoughts from Both of Us
CHAPTER 9 Admixture and History
The Genetics of Admixture
Admixture in Mexicans and Native Americans in North America
Admixture in African Americans in the United States
Admixture in Individual African Americans
Thomas Jefferson and Sally Hemings
Genetic Admixture and the Jewish Diaspora
The Cohen Modal Haplotype
The Lemba
Admixture and Identity
CHAPTER 10 Ancestry, Identity, and Race
Genealogical and Genetic Ancestry
Genetic Ancestry Testing
Genetic Ancestry and Cultural Identity
Ancestry and Identity: A Personal Anecdote
Race and Genetic Variation
Ancestry and History
Appendix: Analyzing DNA
Glossary
CHAPTER Notes
References
Index
PREFACE
A lot can happen in two decades.
Almost 20 years ago one of us (John) decided to write a book about how anthropologists and geneticists use genetic data (in the broad sense of the term) to answer questions about human history, origins, and ancestry. Johnâs goal was to produce a book that would explain in clear terms exactly what anthropologists and geneticists do, something of interest to a general audience and that would be useful in undergraduate classes. He focused on the origins and ancestry of our species and various human populations, as well as the history and ancestry of individuals. In the first edition John described much of the work that had been done using what we call âclassical genetic markers,â or variants that affect the biochemistry of blood cells, as well as even older means of assessing human variation, such as cranial measures. The first edition of this book also included a review of how newer DNA analyses were becoming more central to efforts to address questions about human origins and ancestry (both scientific studies and individualsâ quests for genetic data that could shed light on their personal histories).
Since the publication of the first edition in 2003, the fields of anthropological genetics and human population genetics have exploded due to the rapid development of new genetic technologies. These technologies have allowed us to discover more and more about our genetic history, more quickly (and cheaply) than anyone could have imagined only a few years ago. We now have the laboratory methods and analytical tools to sequence the entire human genome (as well as the genomes of other species), and we can reconstruct DNA sequences from the skeletal remains of individuals who lived tens (and even hundreds) of thousands of years ago. The scope and quantity of data available today are truly remarkable: through the 1990s, genetic studies of human populations often looked at several dozen different markers; now it has become commonplace to examine hundreds of thousands of markers (or more) in an analysis, and datasets contain many more individuals than in the past. Indeed, we might now even run the risk of drowning in data.
Several years ago John noticed how much had changed in the field and realized that the book, although useful in some general ways, had become increasingly outdated. Some of the earlier conclusions had changed, and others had been supplemented and expanded by new data and analyses. This is a reflection of how science works. One of the basic rules about scienceâand scientific knowledgeâis that it is always changing, as we test and retest hypotheses and use new approaches to answer questions. Every question that is answered inevitably leads to new questions, and the challenge in writing a book like this is to capture this history of discovery and the dynamic nature of science. Indeed, one of the goals of the first edition was to show how anthropologists and geneticists use genetic data to address anthropological hypotheses through application of the scientific method.
Because the scientific method has yielded such extensive changes in anthropological knowledge in recent years, the book had to be brought up to date to continue showing this in an effective and useful way. In fact, the pace of discovery has been so rapid and has affected so many different areas of research that John felt it would be exceedingly difficult for any single person to have a comprehensive and hands-on understanding of the entire field. He therefore turned to Deborah, a colleague with similar broad views on anthropology, history, and genetics, but with a different background and a different set of research interests, to help update this book. We are of different generations and have different training and skill sets, but we complement each other in providing this basic introduction to the reader. We want to reach the broadest audience, providing a text that is detailed enough for use in a course on anthropological genetics or human variation, but with key concepts clarified so that other interested readers can dive in without any formal prerequisites. It is our shared view that far too much scientific writing is geared only to the professional or the advanced student, and we want our understanding of and passion for this research to be accessible to all.
To make this a widely useful book (both inside and beyond the classroom), we use two basic approaches. First, we have made much of this book personal, outlining our own interests and research, as well as our personal histories. We find this approach preferable to the passive voice employed in some of the scientific literature. We have both found that our students find this personal involvement more appealing, and many appreciate how our own interests and history mirror theirs (such as the roundabout w...