1.1 Introduction
As society becomes more concerned about environmental quality, there are moves toward producing and using materials that will not accumulate in the environment. For example, many plastics that are made from petrochemicals persist indefinitely after being discarded. Similarly, synthetic fibers such as nylon or polypropylene are extremely stable in dark environments. Thus, there is a trend toward producing and using fibers that will break down after their disposal. Depending upon the fiber, their breakdown may occur by biotic or abiotic processes. Biotic processes involve biochemical reactions that are typically mediated by microorganisms such as bacteria and fungi. Abiotic processes include chemical oxidation and hydrolysis, and photodegradation. This chapter will focus only on biotic processes.
Of course, natural fibers like wool and cotton are broken down through biotic processes. Microorganisms have evolved enzymes that attack key bonds in these natural polymers, thereby releasing monomers that can be used as carbon and energy sources for microbial growth. In contrast, microorganisms lack enzymes to break down many synthetic fibers, thus these materials persist and accumulate in the environment.
This chapter provides an overview of microbial processes involved in the degradation of natural and synthetic fibers, starting with an introduction of relevant terminology. It discusses the methods used to assess the microbial breakdown of fibers and gives examples of the sources of microbial communities and the methods of incubation that are used in these studies. Finally, it provides examples of the types of bonds that are susceptible to microbial attack.
1.2 Background and terminology
Microbial processes, that change the structure or form of any material, always occur at the molecular level. In a general sense, microorganisms such as bacteria and fungi can be considered âbundles of enzymesâ or sources of enzymes that catalyze a diverse array of chemical reactions that break down or modify substrates. Microorganisms carry out these activities to provide energy and suitable smaller molecules for the production of new cellular material, and ultimately new cells. Thus, when considering the microbial attack on any substance, it is important to remember that the size and physical and chemical characteristics of the substance influence how the microbes attack it. In addition, because microorganisms are living entities, environmental conditions must be suitable for their survival and growth. In this section, the general characteristics of fibers, microorganisms, and microbial processes will be discussed and some important terms will be defined.
1.2.1 Fibers, textiles and films
Fiber is the basic element of fabrics and other textile structure [1]. A fiber is typically defined as a material having a length at least 100 times its diameter. These can be natural, such as cellulose or wool, or synthetic, such as nylon. A textile is any product made from fibers [1]. This includes nonwoven fabrics such as felt, in which wool fibers are physically interlocked by a suitable combination of mechanical work, chemical action, moisture, and heat [1]; and woven fabrics in which yarns are interlaced perpendicular to each other. Yarns are made of fibers twisted together in a continuous strand.
Many of the so-called thermoplastic, biodegradable natural polymers, known as poly(hydroxyalkanoates), and some synthetic polymers such as poly(lactides) can be made into fibers by cold drawing, melt spinning or thermal drawing [2, 3]. These polymers can also be extruded as sheets rather than fibers. These sheets are known as films which are not true textiles because they are not made of fibers [1]. Nonetheless, these films of poly(hydroxyalkanoates) or poly(lactides) have the same chemical properties as the corresponding fibers, so for convenience, films are often used in biodegradation studies.
Fibers are composed of polymeric molecules with different arrangements. These can be random or parallel [4]. Amorphous regions of a fiber are due to random or unorganized arrangement of the polymers. In contrast, a parallel, highly ordered arrangement of the polymers is referred to as a crystalline region [4]. Fibers generally contain both types of polymer arrangements (for example, cotton is about 30% amorphous and 70% crystalline) and, typically, fibers of a particular type display greater strength with an increasing proportion of crystalline regions. These different arrangements also affect the biodegradability of fiber; the amorphous regions are more susceptible to biodegradation than the crystalline regions (for example, amorphous cellulose is biodegraded more rapidly than crystalline cellulose [5]).
Hydrogen bonding between chains of polymers is the major force that contributes to crystallinity [4]; the sum of the myriad of weak hydrogen bonds between adjacent polymers yields a strong, tight structure in the crystalline region of a fiber. Covalent cross-linking also occurs in some fibers, most notable are wool and silk in which disulfide bonds form between amino acid residues; the greater the number of disulfide bonds, the tighter the fiber structure. âTightnessâ imparted by hydrogen bonding and cross-linking reduces the susceptibility of the fiber to biodegradation.
1.2.2 Biodegradation, mineralization and biomass formation
The term biodegradation may have different connotations for people in different situations. In the broadest sense, biodegradation is the biologically catalyzed reduction in the complexity of chemicals [6]. A simple example is the conversion of glucose to ethanol during yeast fermentation; ethanol is a less complex molecule than glucose. Mineralization can be considered complete biodegradation, leading to the conversion of organic forms of elements to inorganic forms, as shown in Table 1.1. In some cases, two products are shown Table 1.1, for example, under aerobic conditions, organic-N may be converted to NH3 or NO3â, depending upon the environmental conditions and the structure of the microbial community, that is, if conditions are favorable for nitrifying bacteria, NH3 (the first product of mineralization) may be oxidized to NO3â. An anomaly in Table 1.1 is the appearance of CH4 (an organic compound) as a mineralization product of organic-C. This occurs in methanogenic environments (see Section 1.3.2), where CH4 production occurs along with CO2 production; however, it is generally accepted that CH4 is a product of mineralization in these environments. In non-methanogenic environments, CO2 is the product of mineralization (Table 1.1).
Table 1.1
Major products of microbial mineralization under aerobic or anaerobic conditions
Conditions | Substrate | Inorganic products |
Aerobic | Organic-C | CO2 |
| Organic-H | H2O |
| Organic-N | NH3, NO3â |
| Organic-S | SO42â |
Anaerobic | Organic-C | CO2, CH4 |
| Organic-H | H2, H2O |
| Organic-N | NH3 |
| Organic-S | H2S |
An important product of microbial metabolism and biodegradation is biomass or new cell material. In heterotrophic microorganisms, new cell material is formed by the incorporation of some of the carbon from the biodegradable organic substrates, while a portion of the organic carbon is mineralized to yield energy for biosynthesis of biomass. More energy is produced from the oxidation of an organic substrate in the presence of O2, than in the absence of O2 (see Section 1.2.5), thus, under aerobic conditions, more energy is available for biosynthesis and more substrate carbon is incorporated into biomass in the presence of O2. In general, about 50% of substrate carbon is assimilated into new biomass under aerobic conditions, whereas only about 10% of substrate carbon is assimilated into new biomass under anaerobic conditions.
1.2.3 Microorganisms
The two major groups of microorganisms associated with the breakdown of organic matter are bacteria and fungi, both groups are extremely diverse in form, habitat and activity. Bacteria are typically simple, unicellular, prokaryotic (having no nucleus) organisms. They are commonly 1 to 5 Îźm in size, and are invisible...